Sunday, May 20, 2012

FlyFISH:navigation in the ADIR MFISH images database

FlyFISH allows to visualize images of the ADIR MFISH database. FlyFISH is written in python, the GUI is based on pyQt4, images are loaded and displayed with imread, qimage2ndarray. To work properly, FlyFISH requires:
The path to the DatabaseMFISH.xml file must be modified in the script:
root=et.parse('/home/simon/DatabaseMFISH.xml').getroot() 
and the path to database top directory:
workdir="/home/simon/MFISH/"

The script was tested on ubuntu 12.04, to run faster, the image size was reduced on display:

video
Thanks to ashren.